Changes between Version 7 and Version 8 of OpenSpecimen HowTo Install

Timestamp:

01/09/16 13:39:25 (9 years ago)

Author:

Richard Bramley

Comment:

--

OpenSpecimen HowTo Install

@@ -57 +57 @@
 These later steps are documented in the script {{{/local/os_v20/run_osv20.sh}}}
 
+7. Create the script `run_open_specimen.sh`:
+
+{{{
+#!/bin/bash
+
+unset JAVA_TOOL_OPTIONS
+export JAVA_ROOT=/usr/lib64/jvm/java
+export JDK_HOME=/usr/lib64/jvm/java
+export SDK_HOME=/usr/lib64/jvm/java
+export JAVA_BINDIR=/usr/lib64/jvm/java/bin
+export JRE_HOME=/usr/lib64/jvm/java/jre
+JAVA_HOME=/opt/java
+JRE_HOME=/opt/java/jre
+OPEN_SPECIMEN_DIR=/local/{Open Specimen Directory}/app
+
+export JAVA_TOOL_OPTIONS=-XX:CompressedClassSpaceSize=10m
+export JAVA_OPTS="-Xmx2G -XX:-UseCompressedClassPointers"
+
+$OPEN_SPECIMEN_DIR/bin/catalina.sh start >$OPEN_SPECIMEN_DIR/logs/tomcat-start.log  2>$OPEN_SPECIMEN_DIR/logs/tomcat-start.err &
+}}}
+
+8. Create the script `stop_open_specimen.sh`:
+
+{{{
+#!/bin/bash
+
+unset JAVA_TOOL_OPTIONS
+export JAVA_ROOT=/usr/lib64/jvm/java
+export JDK_HOME=/usr/lib64/jvm/java
+export SDK_HOME=/usr/lib64/jvm/java
+export JAVA_BINDIR=/usr/lib64/jvm/java/bin
+export JRE_HOME=/usr/lib64/jvm/java/jre
+JAVA_HOME=/opt/java
+JRE_HOME=/opt/java/jre
+OPEN_SPECIMEN_DIR=/local/openSpecimen_v2_4/app
+
+export JAVA_TOOL_OPTIONS=-XX:CompressedClassSpaceSize=10m
+export JAVA_OPTS="-Xmx2G -XX:-UseCompressedClassPointers"
+
+$OPEN_SPECIMEN_DIR/bin/catalina.sh stop
+}}}
+
+9. Give `www-run` account permission to run the scripts:
+
+{{{
+setfacl -m u:wwwrun:rx /local/{Open Specimen Directory}/run_open_specimen.sh
+setfacl -m u:wwwrun:rx /local/{Open Specimen Directory}/stop_open_specimen.sh
+}}}
+
+10. Give `www-run` permission to write to the logs and work directories:
+
+{{{
+setfacl -R -m u:wwwrun:rwx /local/{Open Specimen Directory}/logs/
+setfacl -R -m u:wwwrun:rwx /local/{Open Specimen Directory}/work/
+}}}
+
+11. Give `www-run` permission to run Tomcat:
+{{{
+setfacl -m u:wwwrun:rx /local/{Open Specimen Directory}/app/bin/catalina.sh
+}}}
+
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