= Welcome to the LCBRU Informatics Platform wiki =

* Public links
 * BRICCS [http://www2.le.ac.uk/projects/bru/researchers/briccs public web page]

* LCBRU studies supported
 * [[BRICCS]] - where it all began
 * [[DHF]] - Diastolic Heart Failure
 * [[DREAM]]
 * [[GENVASC]] - recruitment across primary care
 * [[GRAPHIC]] - Genetic factors in hypertension
 * [[HDL ethnicity]] - a study into HDL across ethnic groups
 * [[MVO]] - Microvascular Obstruction
 * [[NIHR Bioresource]] - contributing to a national facility for translational medicine
 * [[PRESTIGE]]
 * [[SCAD]] - Spontaneous Coronary Artery Dissection
 * [[TOTAL]] - Routine aspiration thrombectomy versus PPCI alone

* Planning
 * [[Integration phase 20101112]]
 * [[LAMP proposal]]
 * [[Between now and LAMP]]
 * [[Northampton Recruitment into BRICCS]]

* Component pages
 * [[C3PR]]
 * [[caAERS]]
 * CaTissue
   * [wiki:CaTissueClientAPI API Client - 'Sampler']
   * BarCodeReaders - notes on the various input devices reading linear and 2d barcodes
   * CaTissueUpgrade - notes on the upgrade process to v1.2
   * [[Building & Deploying caTissue application from the source code in Ubuntu]]
 * [[CiviCRM]]
  * [[CiviCRM - Create a New Report Template]]
  * [[CiviCRM Genvasc Patient Export]]
 * ClinicalRegistry
 * [[Drupal]]
 * [[DAPS]]
 * [[EDGE - possibly]]
 * [[i2b2]]
   * [[i2b2 - How Tos]]
   * [[i2b2 - Plugins]]
   * [[i2b2 - PDO]]
   * [[i2b2 - Customisations]]
   * [[i2b2 - caTissue integration]]
   * [[i2b2 - UHL clinical informatics system integration]]
   * [[i2b2 - primary care informatics systems integration]]
   * [[i2b2 - Onyx import]]
   * [[i2b2 - fixes]]
   * i2b2 AUG
     * [[i2b2 - AUG 2013]]
   * [[Query Tool and Analysis Types]]
   * Ontology and CRC:
     * [[i2b2 - Documents]]
     * [[i2b2 - DB Basics]]
     * [[i2b2OntologyCRC-1]] Discussion, questions, things discovered
     * [[Snomed CT]] Discussions regarding mapping legacy data to Snomed CT for data management
     * [[c_metadataxml]] Column holding metadata associated with lab findings
   * i2b2 - Web Services
     * [[i2b2 - Importing data via web services]]
     * [[i2b2 - web services, switching them on]]
     * [[i2b2 - The algorithms applied to importing a PDO]]
 * IdLabelPrinting
 * [[MRBS]]
 * [[Onyx]]
   * OnyxCode
   * OnyxQuestionnaire - Developing (and Maintaining) a Questionnaire
   * OnyxDeployment - Deploying a Questionnaire
   * OnyxPrismClient
   * [[Onyx Export and Purge]]
   * [[OnyxExportOntology]] Discussion on deriving an initial ontology
   * OnyxTestSystem
   * OnyxVersions
   * OnyxDatabaseReporting
   * OnyxDataValidation
   * [[Onyx to PDO]] Assumptions underlying importing facts into i2b2 from the BRICCS questionnaire
 * [[PMI Lookup]]
 * RealWorldRecruitment
   * [[AS Study specific]]
 * [[REDCap]]
   * [[REDCap Installation]]
   * [[REDCap Usage]]
   * [[REDCap to i2b2]]


* Infrastructure components
 * [[SystemAdmin]] system admin for the BRICCS infrastructure.
 * [[ServiceDeployment]] recommendations for flexible service deployment
 * [[Subversion]] source code repository
 * [[Trac]] issue tracking system
 * [[Maven]] development tool kit
 * [[Eclipse]] development tool kit
 * [[Backups]] data backup requirements
 * [[SSH]] ssh keys and configuration
 * [[DNS]] DNS configuration for {{{briccs.org.uk}}}
 * [[JBoss]] Settings, experiences and gotchas from working with the JBoss Application Server
 * [[VirtualBox]] !VirtualBox commands and bugs 
 * [[Oracle]] Oracle commands, gotchas and bugs 
 * [[MS SQL issues]] MS SQL Server commands, gotchas and bugs 


* Miscellaneous
 * WebLinks

* GoogleApps
 * Email [http://mail.briccs.org.uk]
 * Docs  [http://docs.briccs.org.uk]

* User pages
  * DaveMorris
  * JeffLusted
  * NickHolden
  * ChrisGreengrass
  * VasilStezhka
  * JasonSelby
  * NileshSamani
  * TimBeck

= Trac notes =

Trac is a '''minimalistic''' approach to '''web-based''' management of
'''software projects'''. Its goal is to simplify effective tracking and handling of software issues, enhancements and overall progress.

All aspects of Trac have been designed with the single goal to 
'''help developers write great software''' while '''staying out of the way'''
and imposing as little as possible on a team's established process and
culture.

As all Wiki pages, this page is editable, this means that you can
modify the contents of this page simply by using your
web-browser. Simply click on the "Edit this page" link at the bottom
of the page. WikiFormatting will give you a detailed description of
available Wiki formatting commands.

"[wiki:TracAdmin trac-admin] ''yourenvdir'' initenv" created
a new Trac environment, containing a default set of wiki pages and some sample
data. This newly created environment also contains 
[wiki:TracGuide documentation] to help you get started with your project.

You can use [wiki:TracAdmin trac-admin] to configure
[http://trac.edgewall.org/ Trac] to better fit your project, especially in
regard to ''components'', ''versions'' and ''milestones''. 


TracGuide is a good place to start.

Enjoy! [[BR]]
''The Trac Team''

== Starting Points ==

 * TracGuide --  Built-in Documentation
 * [http://trac.edgewall.org/ The Trac project] -- Trac Open Source Project
 * [http://trac.edgewall.org/wiki/TracFaq Trac FAQ] -- Frequently Asked Questions
 * TracSupport --  Trac Support

For a complete list of local wiki pages, see TitleIndex.