= Welcome to the LCBRU Informatics Platform wiki = * About us The LCBRU public / general website is at http://www.le.ac.uk/lcbru/ This is the wiki for the Leicester Cardiovascular BRU informatics team. We use it to document the systems we have in use, the studies we are supporting, and the configurations, settings and other necessary information for keeping everything running smoothly. If you are a member of LCBRU staff, please do help us by editing the wiki regularly - you will need to log in (menu in top right corner of the page) to edit content. Don't be scared of making edits - we can always roll back to a previous version if something goes wrong. We also use this system for recording 'tickets' when work needs to be done. Again, you will need to be logged in to create, edit or view tickets. Please remember that this wiki is visible to anonymous visitors, so that we can share information with collaborators and colleagues outside the LCBRU. But that means we must not include any passwords or usernames in the documentation, or any example data which is not entirely fabricated. Items which must be kept confidential should be recorded in tickets, not in the wiki. * LCBRU studies supported * [[BRICCS]] - where it all began * [[DHF]] - Diastolic Heart Failure * [[DREAM]] - Daily REmote Ischaemic Conditioning Post-Acute Myocardial Infarction * [[GENVASC]] - recruitment across primary care * [[GRAPHIC]] - Genetic factors in hypertension * [[HDL ethnicity]] - a study into HDL across ethnic groups * [[MVO]] - Microvascular Obstruction * [[NIHR BioResource]] - contributing to a national facility for translational medicine * [[PRESTIGE]] * [[SCAD]] - Spontaneous Coronary Artery Dissection * [[TOTAL]] - Routine aspiration thrombectomy versus PPCI alone * Planning * [[Integration phase 20101112]] * [[LAMP proposal]] * [[Between now and LAMP]] * [[Northampton Recruitment into BRICCS]] * Component pages * CaTissue * [wiki:CaTissueClientAPI API Client - 'Sampler'] * BarCodeReaders - notes on the various input devices reading linear and 2d barcodes * CaTissueUpgrade - notes on the upgrade process to v1.2 * [[Building & Deploying caTissue application from the source code in Ubuntu]] * [[CiviCRM]] * [[CiviCRM - Create a New Report Template]] * [[CiviCRM Genvasc Patient Export]] * [[CiviCRM Graphic 2 Patient Export]] * [[CiviCRM - Rest API]] * [[CiviCRM GP/Practice Update process]] * ClinicalRegistry * [[Darwin]] * [[Drupal]] * [[DAPS]] * [[i2b2]] * [[i2b2 - How Tos]] * [[i2b2 - Debugging and Gotchas]] * [[i2b2 - Plugins]] * [[i2b2 - PDO]] * [[i2b2 - Mapped Importer]] * [[i2b2 - Customisations]] * [[i2b2 - caTissue integration]] * [[i2b2 - UHL clinical informatics system integration]] * [[i2b2 - primary care informatics systems integration]] * [[i2b2 - Onyx import]] * [[i2b2 - fixes]] * i2b2 AUG * [[i2b2 - AUG 2013]] * [[Query Tool and Analysis Types]] * Ontology and CRC: * [[i2b2 - Documents]] * [[i2b2 - DB Basics]] * [[i2b2OntologyCRC-1]] Discussion, questions, things discovered * [[Snomed CT]] Discussions regarding mapping legacy data to Snomed CT for data management * [[c_metadataxml]] Column holding metadata associated with lab findings * i2b2 - Web Services * [[i2b2 - Importing data via web services]] * [[i2b2 - web services, switching them on]] * [[i2b2 - The algorithms applied to importing a PDO]] * IdLabelPrinting * [[MRBS]] * [[Onyx]] * OnyxCode * OnyxQuestionnaire - Developing (and Maintaining) a Questionnaire * OnyxDeployment - Deploying a Questionnaire * OnyxPrismClient * [[Onyx Export and Purge]] * [[OnyxExportOntology]] Discussion on deriving an initial ontology * OnyxTestSystem * OnyxVersions * OnyxDatabaseReporting * OnyxDataValidation * [[Onyx to PDO]] Assumptions underlying importing facts into i2b2 from the BRICCS questionnaire * [[PMI Lookup]] * RealWorldRecruitment * [[AS Study specific]] * [[REDCap]] * [[REDCap Installation]] * [[REDCap Usage]] * [[REDCap to i2b2]] * Infrastructure components * [[SystemAdmin]] system admin for the BRICCS infrastructure. * [[ServiceDeployment]] recommendations for flexible service deployment * [[Subversion]] source code repository * [[Trac]] issue tracking system * [[Maven]] development tool kit * [[Eclipse]] development tool kit * [[Backups]] data backup requirements * [[SSH]] ssh keys and configuration * [[DNS]] DNS configuration for {{{briccs.org.uk}}} * [[JBoss]] Settings, experiences and gotchas from working with the JBoss Application Server * [[VirtualBox]] !VirtualBox commands and bugs * [[Oracle]] Oracle commands, gotchas and bugs * [[MS SQL issues]] MS SQL Server commands, gotchas and bugs * Components under consideration, or not implemented * [[C3PR]] * [[caAERS]] * [[EDGE - possibly]] * Miscellaneous * WebLinks * GoogleApps * Email [http://mail.briccs.org.uk] * Docs [http://docs.briccs.org.uk] * User pages * DaveMorris * JeffLusted * NickHolden * ChrisGreengrass * VasilStezhka * JasonSelby * NileshSamani * TimBeck = Trac notes = Trac is a '''minimalistic''' approach to '''web-based''' management of '''software projects'''. Its goal is to simplify effective tracking and handling of software issues, enhancements and overall progress. All aspects of Trac have been designed with the single goal to '''help developers write great software''' while '''staying out of the way''' and imposing as little as possible on a team's established process and culture. As all Wiki pages, this page is editable, this means that you can modify the contents of this page simply by using your web-browser. Simply click on the "Edit this page" link at the bottom of the page. WikiFormatting will give you a detailed description of available Wiki formatting commands. "[wiki:TracAdmin trac-admin] ''yourenvdir'' initenv" created a new Trac environment, containing a default set of wiki pages and some sample data. This newly created environment also contains [wiki:TracGuide documentation] to help you get started with your project. You can use [wiki:TracAdmin trac-admin] to configure [http://trac.edgewall.org/ Trac] to better fit your project, especially in regard to ''components'', ''versions'' and ''milestones''. TracGuide is a good place to start. Enjoy! [[BR]] ''The Trac Team'' == Starting Points == * TracGuide -- Built-in Documentation * [http://trac.edgewall.org/ The Trac project] -- Trac Open Source Project * [http://trac.edgewall.org/wiki/TracFaq Trac FAQ] -- Frequently Asked Questions * TracSupport -- Trac Support For a complete list of local wiki pages, see TitleIndex.