i2b2 HowTo Switch on Web Services ¶

Tags: i2b2 HowTo

Not sure what this refers to, but it might be important

Introduction ¶

The out of the box VM setup for i2B2 has its web services definition (wsdl) switched 'off' by default.

To enable the WSDL, the following steps must be taken

Procedure ¶

Step 1 ¶

Edit the file /opt/jboss-4.2.2.GA/server/default/deploy/i2b2.war/WEB-INF/conf/axis2.xml to

<messageReceivers> <messageReceiver mep="​http://www.w3.org/2004/08/wsdl/in-only"class="org.apache.axis2.rpc.receivers.RPCInOnlyMessageReceiver"/> <messageReceiver mep="​http://www.w3.org/2004/08/wsdl/in-out" class="org.apache.axis2.rpc.receivers.RPCMessageReceiver"/> </messageReceivers>

Step 2 ¶

Overwrite the files in the directory /opt/jboss-4.2.2.GA/server/default/deploy/i2b2.war/WEB-INF/services

There are 6 files to overwrite:

• ProjectManagement.aar
• FRC.aar
• Ontology.aar
• QueryProcessor.aar
• version.aar
• Workplace.aar

(place them in svn)

Step 3 ¶

The directories below are not necessarily correct. It depends on where i2b2 is installed`

1. Stop server: /opt/jboss-4.2.2.GA/bin/shutdown.sh -S
2. Start server: /opt/jboss-4.2.2.GA/bin/run.sh -b 0.0.0.0 &

Error: Macro BackLinks(None) failed

'Environment' object has no attribute 'get_db_cnx'