Changes between Version 16 and Version 17 of i2b2 Onyx Ontology v2


Ignore:
Timestamp:
05/13/13 09:58:28 (12 years ago)
Author:
Richard Bramley
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • i2b2 Onyx Ontology v2

    v16 v17  
    373373   * Start Date: ![EndContactQuestionnaire: QuestionnaireRun.timeStart]
    374374   * Modifier: 'Interview'?
     375* Risk Factors
     376 * Tobacco
     377  * Has smoked or used any tobacco or nicotine product ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     378   * ![RiskFactorQuestionnaire: Have you ever smoked or used any tobacco or nicotine product]
     379    * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     380   * Cigarettes
     381    * Has smoked at some time ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     382     * ![RiskFactorQuestionnaire: Which of the following have you ever smoked or used]
     383     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     384    * Has smoked cigarettes on most days ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     385     * ![RiskFactorQuestionnaire: Have you ever smoked cigarettes on most days]
     386     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     387    * Currently smoke cigarettes ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     388     * ![RiskFactorQuestionnaire: Do you currently smoke cigarettes]
     389     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     390    * Maximum cigarettes per day ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     391     * ![RiskFactorQuestionnaire: On average, how many cigarettes did you smoke per day when you were smoking the most]
     392     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     393    * Age of regular smoking onset (Numeric)
     394     * ![RiskFactorQuestionnaire: How old were you when you began smoking cigarettes on most days]
     395     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     396    * Age of smoking cessation (Numeric)
     397     * ![RiskFactorQuestionnaire: How old were you when you stopped smoking cigarettes]
     398     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     399    * cigarettes currently smoked per day (Numeric)
     400     * ![RiskFactorQuestionnaire: On average, how many cigarettes do you currently smoke per day]
     401     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     402    * Time since last cigarette (Recent time)
     403     * ![RiskFactorQuestionnaire: When was the last time you had a cigarette]
     404     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     405   * Cigars
     406    * Has smoked at some time ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     407     * ![RiskFactorQuestionnaire: Which of the following have you ever smoked or used]
     408     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     409    * Has smoked cigars on most days ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     410     * ![RiskFactorQuestionnaire: Have you ever smoked cigars regularly]
     411     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     412    * Currently smokes cigars ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     413     * ![RiskFactorQuestionnaire: Do you currently smoke cigars]
     414     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     415    * Maximum cigars per day ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     416     * ![RiskFactorQuestionnaire: On average, how many cigars did you smoke per day when you were smoking the most]
     417     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     418    * Age of regular smoking of cigars onset (Numeric)
     419     * ![RiskFactorQuestionnaire: How old were you when you began smoking cigars on most days]
     420     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     421    * Age of smoking cigars cessation (Numeric)
     422     * ![RiskFactorQuestionnaire: How old were you when you stopped smoking cigars]
     423     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     424    * cigars currently smoked per day (Numeric)
     425     * ![RiskFactorQuestionnaire: On average, how many cigars do you currently smoke per day]
     426     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     427    * Time since last cigar (Recent time)
     428     * ![RiskFactorQuestionnaire: When was the last time you had a cigar]
     429     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     430
     431   * Pipe
     432    * Has smoked at some time ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     433     * ![RiskFactorQuestionnaire: Which of the following have you ever smoked or used]
     434     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     435    * Has smoked a pipe on most days ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     436     * ![RiskFactorQuestionnaire: Have you ever smoked a pipe regularly]
     437     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     438    * Currently smokes a pipe ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     439     * ![RiskFactorQuestionnaire: Do you currently smoke a pipe]
     440     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     441    * Maximum pipe tobacco per day ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     442     * ![RiskFactorQuestionnaire: How much tobacco did you smoke per day when you were smoking the most]
     443     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     444    * Age of regular pipe smoking onset (Numeric)
     445     * ![RiskFactorQuestionnaire: How old were you when you began smoking a pipe on most days]
     446     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     447    * Age of smoking a pipe cessation (Numeric)
     448     * ![RiskFactorQuestionnaire: How old were you when you stopped smoking a pipe]
     449     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     450    * Pipe tobacco currently smoked per day (Numeric)
     451     * ![RiskFactorQuestionnaire: How much tobacco do you currently smoke per day]
     452     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     453    * Time since last pipe(Recent time)
     454     * ![RiskFactorQuestionnaire: When was the last time you smoked a pipe]
     455     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     456
     457   * Snuff or Chewing Tobabcco
     458    * Has used at some time ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     459     * ![RiskFactorQuestionnaire: Which of the following have you ever smoked or used]
     460     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     461    * Has used snuff or chewing tobacco on most days ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     462     * ![RiskFactorQuestionnaire: Have you ever used snuff or chewing tobacco regularly]
     463     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     464    * Currently uses snuff or chewing tobacco ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     465     * ![RiskFactorQuestionnaire: Do you currently use snuff or chewing tobacco]
     466     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     467    * Maximum snuff or chewing tobacco usage ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     468     * ![RiskFactorQuestionnaire: How much snuff or chewing tobacco did you smoke per day when you were using the most]
     469     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     470    * Age of snuff or chewing tobacco usage onset (Numeric)
     471     * ![RiskFactorQuestionnaire: How old were you when you began using snuff or chewing tobacco]
     472     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     473    * Age of snuff or chewing tobacco usage cessation (Numeric)
     474     * ![RiskFactorQuestionnaire: How old were you when you stopped using snuff or chewing tobacco]
     475     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     476    * snuff or chewing tobacco currently used per day (Numeric)
     477     * ![RiskFactorQuestionnaire: How much snuff or chewing tobacco do you use per week]
     478     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     479    * Time since last pipe(Recent time)
     480     * ![RiskFactorQuestionnaire: When was the last time you has snuff or chewing tobacco]
     481     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     482   
     483   * Other tobacco or Nicotine Product
     484    * Has used at some time ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     485     * ![RiskFactorQuestionnaire: Which of the following have you ever smoked or used]
     486     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     487    * Has used other tobacco or nicotine product for at least 6 months('Y', 'N', 'Prefer not to answer' & 'Don't know')
     488     * ![RiskFactorQuestionnaire: Have you ever used any other tobacco or nicotine product for at least 6 months]
     489     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     490    * Currently uses other tobacco or nicotine product ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     491     * ![RiskFactorQuestionnaire: Do you currently use any other tobacco or nicotine product]
     492     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     493    * Maximum tobacco or nicotine product usage per week ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     494     * ![RiskFactorQuestionnaire: How much of the tobacco or nicotine product per week did you use when you were using the most]
     495     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     496    * Age of tobacco or nicotine product usage onset (Numeric)
     497     * ![RiskFactorQuestionnaire: How old were you when you began using the tobacco or nicotine product]
     498     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     499    * Age of tobacco or nicotine product usage cessation (Numeric)
     500     * ![RiskFactorQuestionnaire: How old were you when you stopped using the tobacco or nicotine product]
     501     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     502    * Current tobacco or nicotine product usage per week (Numeric)
     503     * ![RiskFactorQuestionnaire: How much of the tobacco or nicotine product do you use per week]
     504     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     505    * Time since last tobacco or nicotine usage(Recent time)
     506     * ![RiskFactorQuestionnaire: When was the last time you had any tobacco or nicotine]
     507     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     508   
     509   * Alcohol
     510    * Has drunk alcohol ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     511     * ![RiskFactorQuestionnaire: Have you ever drunk alcohol]
     512     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     513    * Has drunk alcohol at least once per week('Y', 'N', 'Prefer not to answer' & 'Don't know')
     514     * ![RiskFactorQuestionnaire: Have you ever drunk alcohol at least once per week]
     515     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     516    * Currently drinks alcohol at least once per week ('Y', 'N', 'Prefer not to answer' & 'Don't know')
     517     * ![RiskFactorQuestionnaire: Do you currently drink alcohol at least once per week]
     518     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     519    * Current pints of beer drunk in a typical week (Numeric)
     520     * ![RiskFactorQuestionnaire: How many pints of beer do you drink in a typical week]
     521     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     522    * Current glasses of white wine drunk in a typical week (Numeric)
     523     * ![RiskFactorQuestionnaire: How many glasses of white wine do you drink in a typical week]
     524     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     525    * Current glasses of red wine in a typical week (Numeric)
     526     * ![RiskFactorQuestionnaire: How many glasses of red wine do you drink in a typical week]
     527     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     528    * Current glasses of rose wine in a typical week (Numeric)
     529     * ![RiskFactorQuestionnaire: How many glasses of rose wine do you drink in a typical week]
     530     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     531    * Current measures of spirits in a typical week (Numeric)
     532     * ![RiskFactorQuestionnaire: How many measures of spirits do you drink in a typical week]
     533     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     534    * Age of Alcohol usage onset (Numeric)
     535     * ![RiskFactorQuestionnaire: How old were you when you began drinking alcohol]
     536     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     537    * Time since last alcohol usage(Recent time)
     538     * ![RiskFactorQuestionnaire: When was the last time you had a drink containing alcohol]
     539     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     540
     541   * Diet
     542    * Type of diet(Enumerated list)
     543     * ![RiskFactorQuestionnaire: How would you describe your diet]
     544     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     545
     546   * Exercise
     547    * Work involves physical activity(yes/no)
     548     * ![RiskFactorQuestionnaire: If you work, does your work involve any physical activity]
     549     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     550    * Undertakes regular exercise(yes/no)
     551     * ![RiskFactorQuestionnaire: Apart from work, do you undertake any regular physical exercise over and above that of daily living]
     552     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     553
     554   * Familiy History
     555    * Number of brothers(Numeric)
     556     * ![RiskFactorQuestionnaire: How many brothers do you have]
     557     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     558    * Number of sisters(Numeric)
     559     * ![RiskFactorQuestionnaire: How many sisters do you have]
     560     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     561    * Number of children (Numeric)
     562     * ![RiskFactorQuestionnaire: How many children do you have]
     563     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     564    * Relatives suffered angina or other Coronary Artery Disease (y, n, pnta, dk)
     565     * ![RiskFactorQuestionnaire: Have any of your relatives suffered angina or other Coronary Artery Disease]
     566      * Modifier: Father, Mother, Brother, Sister, Child
     567     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     568    * Relatives suffered a heart attack or Myocardial Infarction (y, n, pnta, dk)
     569     * ![RiskFactorQuestionnaire: Have any of your relatives suffered a heart attack or Myocardial Infarction]
     570      * Modifier: Father, Mother, Brother, Sister, Child
     571     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     572    * Relatives been diagnosed with heart failure (y, n, pnta, dk)
     573     * ![RiskFactorQuestionnaire: Have any of your relatives ever been diagnosed with heart failure]
     574      * Modifier: Father, Mother, Brother, Sister, Child
     575     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     576    * Relatives suffered Atrial Fibrillation (AF) (y, n, pnta, dk)
     577     * ![RiskFactorQuestionnaire: Have any of your relatives ever suffered Atrial Fibrillation (AF)]
     578      * Modifier: Father, Mother, Brother, Sister, Child
     579     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     580    * Relatives suffered a stroke or CVA (y, n, pnta, dk)
     581     * ![RiskFactorQuestionnaire: Have any of your relatives ever suffered a stroke or CVA]
     582      * Modifier: Father, Mother, Brother, Sister, Child
     583     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     584    * Relatives diagnosed with high blood pressure (y, n, pnta, dk)
     585     * ![RiskFactorQuestionnaire: Have any of your relatives been diagnosed with high blood pressure]
     586      * Modifier: Father, Mother, Brother, Sister, Child
     587     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     588    * Relatives diagnosed with valvular heart disease (y, n, pnta, dk)
     589     * ![RiskFactorQuestionnaire: Have any of your relatives been diagnosed with valvular heart disease]
     590      * Modifier: Father, Mother, Brother, Sister, Child
     591     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     592
     593    * Relatives age of onset of angina or Coronary Artery Disease (numeric)
     594     * ![RiskFactorQuestionnaire: At what age did they first suffer from angina or Coronary Artery Disease]
     595      * Modifier: Father, Mother, Brother, Sister, Child
     596     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     597    * Relatives received treatment for angina or Coronary Artery Disease (y, n, pnta, dk)
     598     * ![RiskFactorQuestionnaire: Have they received treatment for their angina or Coronary Artery Disease]
     599      * Modifier: Father, Mother, Brother, Sister, Child
     600     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     601
     602    * Relatives age of first heart attack or Myocardial Infarction (numeric)
     603     * ![RiskFactorQuestionnaire: At what age did they suffer their first heart attack or Myocardial Infarction]
     604      * Modifier: Father, Mother, Brother, Sister, Child
     605     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     606    * Relatives received treatment for heart attack or Myocardial Infarction (y, n, pnta, dk)
     607     * ![RiskFactorQuestionnaire: Have they received treatment for their heart attack or Myocardial Infarction]
     608      * Modifier: Father, Mother, Brother, Sister, Child
     609     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     610
     611    * Relatives age of first suffer from heart failure (numeric)
     612     * ![RiskFactorQuestionnaire: At what age did they first suffer from heart failure]
     613      * Modifier: Father, Mother, Brother, Sister, Child
     614     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     615    * Relatives received treatment for their heart failure (y, n, pnta, dk)
     616     * ![RiskFactorQuestionnaire: Have they received treatment for their heart failure]
     617      * Modifier: Father, Mother, Brother, Sister, Child
     618     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     619
     620    * Relatives age of first suffer from Atrial Fibrillation (numeric)
     621     * ![RiskFactorQuestionnaire: At what age did they first suffer from Atrial Fibrillation]
     622      * Modifier: Father, Mother, Brother, Sister, Child
     623     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     624    * Relatives received treatment for their Atrial Fibrillation (y, n, pnta, dk)
     625     * ![RiskFactorQuestionnaire: Have they received treatment for their Atrial Fibrillation]
     626      * Modifier: Father, Mother, Brother, Sister, Child
     627     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     628
     629    * Relatives age suffer their first stroke or CVA (numeric)
     630     * ![RiskFactorQuestionnaire: At what age did they suffer their first stroke or CVA]
     631      * Modifier: Father, Mother, Brother, Sister, Child
     632     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     633    * Relatives received treatment for the stroke or CVA (y, n, pnta, dk)
     634     * ![RiskFactorQuestionnaire: Were they treated for the stroke or CVA]
     635      * Modifier: Father, Mother, Brother, Sister, Child
     636     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     637
     638    * Relatives age first suffer from high blood pressure (numeric)
     639     * ![RiskFactorQuestionnaire: At what age did they first suffer from high blood pressure]
     640      * Modifier: Father, Mother, Brother, Sister, Child
     641     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     642    * Relatives received treatment for high blood pressure (y, n, pnta, dk)
     643     * ![RiskFactorQuestionnaire: Have they received treatment for their high blood pressure]
     644      * Modifier: Father, Mother, Brother, Sister, Child
     645     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     646
     647    * Relatives age first suffer from valvular heart disease (numeric)
     648     * ![RiskFactorQuestionnaire: At what age did they first suffer from valvular heart disease]
     649      * Modifier: Father, Mother, Brother, Sister, Child
     650     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     651    * Relatives received treatment for valvular heart disease (y, n, pnta, dk)
     652     * ![RiskFactorQuestionnaire: Have they received treatment for their valvular heart disease]
     653      * Modifier: Father, Mother, Brother, Sister, Child
     654     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
     655
     656''The cause of relative's death is a tricky one.  Here are some options:''
     657
     658    * Cause of close relative's death (Leaf for each type)
     659     * ![RiskFactorQuestionnaire: Do you know the cause of your xxxx's death]
     660      * Modifier: Father, Mother, Brother, Sister, Child
     661      * Modifier 'Sudden':  ![RiskFactorQuestionnaire: Was their death sudden and unexpected]
     662      * Modifier 'Sudden':  ![RiskFactorQuestionnaire: Was their
     663
     664death sudden and unexpected]
     665     * Start Date: ![RiskFactorQuestionnaire: QuestionnaireRun.timeStart]
    375666
    376667