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i2b2 - Onyx ontology v2

Suggested version 2 of the Onyx ontology in i2b2.

• Consent
  • Further Contact (Enumerated Value)
    • [ManualConsentQuestionnaire : Does the participant consent to further contact from BRU?]
      • Start Date: ?
  • All other questions irrelevant?
• Symptoms (Leaf per symptom)
  • [DataSubmissionQuestionnaire : Principle Symptoms]
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
    • Modifier: 'Recruiting period of care presenting symptoms'
  • Additional Symptoms (Potential future target for NLP)
    • [DataSubmissionQuestionnaire : Please supply details of the additional symptom(s)]
      • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
      • Modifier: 'Recruiting period of care presenting symptoms'
• Diagnoses (Folder per diagnosis. Then each folder has a 'Y', 'N', 'Prefer not to answer' & 'Don't know')
  • [DataSubmissionQuestionnaire : Presenting Primary Diagnosis]:Y
    • Modifier: 'Recruiting period of care presenting primary diagnosis'
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
  • [DataSubmissionQuestionnaire : Acute associated diagnoses]:Y
    • Modifier: 'Recruiting period of care presenting secondary diagnosis'
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
  • Hypertension
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from high blood pressure]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from high blood pressure] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your high blood pressure]
  • Diabetes
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from diabetes]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from diabetes] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: [MedicalHistoryInterviewQuestionnaire: Which type of diabetes]
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your diabetes]
  • Details of other diagnoses (Potential future target for NLP)
    • [DataSubmissionQuestionnaire : Please supply details of the other secondary diagnosis]
      • Modifier: 'Recruiting period of care presenting other secondary diagnosis'
      • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
• Hospitalisation History (for want of a much better title)
  • Discharge Method (Enumerated Value)
    • [ConclusionQuestionnaire : Discharge Method]
      • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
      • Modifier: 'Recruiting period of care'
• Prescribing (Leaf per drug)
  • [ConclusionQuestionnaire : Drugs on Discharge]
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
    • Modifier: 'Recruiting period of care discharge'
• Procedures
  • CABG Coronary Artery Bypass Graft (Start Date)
    • [DataSubmissionQuestionnaire : CABG Coronary Artery Bypass Graft]
      • Modifier: 'Notes from period of care'?
  • Valve Surgery (Start Date)
    • [DataSubmissionQuestionnaire : Valve Surgery]
      • Modifier: 'Notes from period of care'?
  • TAVI - Transcatheter Aortic Valve Implantation (Start Date)
    • [DataSubmissionQuestionnaire : TAVI - Transcatheter Aortic Valve Implantation]
      • Modifier: 'Notes from period of care'?
  • PPCI - Primary Percutaneous Coronary Intervention (Start Date)
    • [DataSubmissionQuestionnaire : PPCI - Primary Percutaneous Coronary Intervention]
      • Modifier: 'Notes from period of care'?
  • Other PCI (Start Date)
    • [DataSubmissionQuestionnaire : Other PCI]
      • Modifier: 'Notes from period of care'?
  • Pacemaker insertion (Start Date)
    • [DataSubmissionQuestionnaire : Pacemaker insertion]
      • Modifier: 'Notes from period of care'?
  • ICD - Implantable Cardioverter Defibrillator (Start Date)
    • [DataSubmissionQuestionnaire : ICD - Implantable Cardioverter Defibrillator]
      • Modifier: 'Notes from period of care'?
  • DC Cardioversion (Start Date)
    • [DataSubmissionQuestionnaire : DC Cardioversion]
      • Modifier: 'Notes from period of care'?
  • LVAD - Left Ventricular Assist Device (Start Date)
    • [DataSubmissionQuestionnaire : LVAD - Left Ventricular Assist Device]
      • Modifier: 'Notes from period of care'?
  • Thrombolysis (Start Date)
    • [DataSubmissionQuestionnaire : Thrombolysis]
      • Modifier: 'Notes from period of care'?
  • Electrophysiology (EP) / Radiofrequency (RF) Ablation(Start Date)
    • [DataSubmissionQuestionnaire : Electrophysiology (EP) / Radiofrequency (RF) Ablation]
      • Modifier: 'Notes from period of care'?
  • Coronary Angiography(Start Date)
    • [DataSubmissionQuestionnaire : Coronary Angiography]
      • Modifier: 'Notes from period of care'?
• Observations
  • Heart Rate(Numeric)
    • [DataSubmissionQuestionnaire : First recorded Heart Rate during this episode of care]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
    • [DataSubmissionQuestionnaire : Latest recorded Heart Rate]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Systolic Blood Pressure(Numeric)
    • [DataSubmissionQuestionnaire : First recorded Systolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
    • [DataSubmissionQuestionnaire : Latest recorded Systolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Diastolic Blood Pressure(Numeric)
    • [DataSubmissionQuestionnaire : First recorded Diastolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
    • [DataSubmissionQuestionnaire : Latest recorded Diastolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Height(Numeric)
    • [DataSubmissionQuestionnaire : Height]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Weight(Numeric)
    • [DataSubmissionQuestionnaire : Weight]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Measurement around the waist(Numeric)
    • [EndContactQuestionnaire: Measurement around the waist]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Measurement around the hips(Numeric)
    • [EndContactQuestionnaire: Measurement around the hips]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - biceps(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - biceps]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - triceps(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - triceps]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - subscapular(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - subscapular]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - supra-iliac(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - supra-iliac]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - supra-iliac(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - supra-iliac]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?

Ignored Data

• EndContactQuestionnaire
  • Primary email address
  • Additional email address