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i2b2 - Onyx ontology v2

Suggested version 2 of the Onyx ontology in i2b2.

• Consent
  • Further Contact (Enumerated Value)
    • [ManualConsentQuestionnaire : Does the participant consent to further contact from BRU?]
      • Start Date: ?
  • All other questions irrelevant?
• Symptoms (Leaf per symptom)
  • [DataSubmissionQuestionnaire : Principle Symptoms]
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
    • Modifier: 'Recruiting period of care presenting symptoms'
  • Additional Symptoms (Potential future target for NLP)
    • [DataSubmissionQuestionnaire : Please supply details of the additional symptom(s)]
      • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
      • Modifier: 'Recruiting period of care presenting symptoms'
• Diagnoses (Folder per diagnosis. Then each folder has a 'Y', 'N', 'Prefer not to answer' & 'Don't know')
  • [DataSubmissionQuestionnaire : Presenting Primary Diagnosis]:Y
    • Modifier: 'Recruiting period of care presenting primary diagnosis'
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
  • [DataSubmissionQuestionnaire : Acute associated diagnoses]:Y
    • Modifier: 'Recruiting period of care presenting secondary diagnosis'
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
  • Hypertension
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from high blood pressure]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from high blood pressure] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your high blood pressure]
  • Diabetes
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from diabetes]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from diabetes] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: [MedicalHistoryInterviewQuestionnaire: Which type of diabetes]
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your diabetes]
  • High Cholesterol
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from high cholesterol]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from high cholesterol] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your high cholesterol]
  • Myocardial Infarction
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered a heart attack or myocardial infarction (M.I.)]
      • One record for each [MedicalHistoryInterviewQuestionnaire : How many heart attacks or MIs have you had]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: Year of occurrence of each MI] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your MI]
  • Cerebrovascular Accident (CVA)
    • [MedicalHistoryInterviewQuestionnaire : Have you ever had a stroke or a cerebrovascular accident (CVA)]
      • One record for each [MedicalHistoryInterviewQuestionnaire : How many CVAs]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: Year of occurrence of each CVA] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your CVA]
  • Transient Ischaemic Attack (TIA)
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from transient ischaemic attack (TIA)]
      • One record for each [MedicalHistoryInterviewQuestionnaire : How many TIAs have you suffered]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: Year of occurrence of each TIA] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: ave you received treatment for your TIA]
  • Angina
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from angina]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from angina] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your angina]
  • Peripheral Vascular Disease (PVD)
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from peripheral vascular disease (PVD)]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from peripheral vascular disease (PVD)] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your PVD]
  • Valvular Heart Disease
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from valvular heart disease]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from valvular heart disease] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Type' - [MedicalHistoryInterviewQuestionnaire: Which type of Valvular Heart Disease have you had]
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your valvular heart disease]
  • Aortic Aneurysm
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from an aortic aneurysm]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from aortic aneurysm] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your aortic aneurysm]
  • Chronic Renal Failure
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from chronic renal failure]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from chronic renal failure] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your chronic renal failure]
  • Chronic Obstructive airway disease (COAD) or chronic obstructive pulmonary disease (COPD)
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from chronic obstructive airway disease (COAD) or chronic obstructive pulmonary disease (COPD)]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from COAD or COPD] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your COAD or COPD]
  • liver disease
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from liver disease]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from liver disease] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your liver disease]
  • asthma
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from asthma]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from asthma] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your asthma]
  • Atrial Fibrillation (AF)
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from Atrial Fibrillation (AF)]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: When did you first suffer from AF] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your AF]
  • heart rhythm disturbance
    • [MedicalHistoryInterviewQuestionnaire : Have you ever suffered from any other heart rhythm disturbance]
      • Modifier: 'Patient questionnaire'
      • Start Date for 'Y' : [MedicalHistoryInterviewQuestionnaire: heart rhythm disturbance] > ?
      • Start Date for for other answers : [MedicalHistoryInterviewQuestionnaire: QuestionnaireRun.timeStart] > ?
      • Modifier: 'Treated' - [MedicalHistoryInterviewQuestionnaire: Have you received treatment for your other heart rhythm disturbance]
  • Details of other diagnoses (Potential future target for NLP)
    • [DataSubmissionQuestionnaire : Please supply details of the other secondary diagnosis]
      • Modifier: 'Recruiting period of care presenting other secondary diagnosis'
      • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
• Hospitalisation History (for want of a much better title)
  • Discharge Method (Enumerated Value)
    • [ConclusionQuestionnaire : Discharge Method]
      • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
      • Modifier: 'Recruiting period of care'
• Prescribing (Leaf per drug)
  • [ConclusionQuestionnaire : Drugs on Discharge]
    • Start Date: [DataSubmissionQuestionnaire : When was the First Onset of Symptoms] > ?
    • Modifier: 'Recruiting period of care discharge'
• Procedures
  • CABG Coronary Artery Bypass Graft (Start Date)
    • [DataSubmissionQuestionnaire : CABG Coronary Artery Bypass Graft]
      • Modifier: 'Notes from period of care'?
  • Valve Surgery (Start Date)
    • [DataSubmissionQuestionnaire : Valve Surgery]
      • Modifier: 'Notes from period of care'?
  • TAVI - Transcatheter Aortic Valve Implantation (Start Date)
    • [DataSubmissionQuestionnaire : TAVI - Transcatheter Aortic Valve Implantation]
      • Modifier: 'Notes from period of care'?
  • PPCI - Primary Percutaneous Coronary Intervention (Start Date)
    • [DataSubmissionQuestionnaire : PPCI - Primary Percutaneous Coronary Intervention]
      • Modifier: 'Notes from period of care'?
  • Other PCI (Start Date)
    • [DataSubmissionQuestionnaire : Other PCI]
      • Modifier: 'Notes from period of care'?
  • Pacemaker insertion (Start Date)
    • [DataSubmissionQuestionnaire : Pacemaker insertion]
      • Modifier: 'Notes from period of care'?
  • ICD - Implantable Cardioverter Defibrillator (Start Date)
    • [DataSubmissionQuestionnaire : ICD - Implantable Cardioverter Defibrillator]
      • Modifier: 'Notes from period of care'?
  • DC Cardioversion (Start Date)
    • [DataSubmissionQuestionnaire : DC Cardioversion]
      • Modifier: 'Notes from period of care'?
  • LVAD - Left Ventricular Assist Device (Start Date)
    • [DataSubmissionQuestionnaire : LVAD - Left Ventricular Assist Device]
      • Modifier: 'Notes from period of care'?
  • Thrombolysis (Start Date)
    • [DataSubmissionQuestionnaire : Thrombolysis]
      • Modifier: 'Notes from period of care'?
  • Electrophysiology (EP) / Radiofrequency (RF) Ablation(Start Date)
    • [DataSubmissionQuestionnaire : Electrophysiology (EP) / Radiofrequency (RF) Ablation]
      • Modifier: 'Notes from period of care'?
  • Coronary Angiography(Start Date)
    • [DataSubmissionQuestionnaire : Coronary Angiography]
      • Modifier: 'Notes from period of care'?
• Observations
  • Heart Rate(Numeric)
    • [DataSubmissionQuestionnaire : First recorded Heart Rate during this episode of care]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
    • [DataSubmissionQuestionnaire : Latest recorded Heart Rate]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Systolic Blood Pressure(Numeric)
    • [DataSubmissionQuestionnaire : First recorded Systolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
    • [DataSubmissionQuestionnaire : Latest recorded Systolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Diastolic Blood Pressure(Numeric)
    • [DataSubmissionQuestionnaire : First recorded Diastolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
    • [DataSubmissionQuestionnaire : Latest recorded Diastolic Blood Pressure]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Height(Numeric)
    • [DataSubmissionQuestionnaire : Height]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Weight(Numeric)
    • [DataSubmissionQuestionnaire : Weight]
      • Start Date: ?
      • Modifier: 'Notes from period of care'?
  • Measurement around the waist(Numeric)
    • [EndContactQuestionnaire: Measurement around the waist]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Measurement around the hips(Numeric)
    • [EndContactQuestionnaire: Measurement around the hips]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - biceps(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - biceps]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - triceps(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - triceps]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - subscapular(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - subscapular]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - supra-iliac(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - supra-iliac]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?
  • Skin-fold measurement - supra-iliac(Numeric)
    • [EndContactQuestionnaire: Skin-fold measurement - supra-iliac]
      • Start Date: [EndContactQuestionnaire: QuestionnaireRun.timeStart]
      • Modifier: 'Interview'?

Ignored Data

• EndContactQuestionnaire
  • Primary email address
  • Additional email address